Synthesis of Ethyl 2-(4-halobenzyl)-3-oxobutanoate and determination of its Biological activity by using prediction of activity spectra for substance
Kavita R. Chandramore1, Rohan S. Ahire2
1Department of Pharmaceutical Chemistry, Dr. J. D Pawar College of Pharmacy, Kalwan, Nashik, Maharashtra.
2Department of Pharmaceutical Chemistry, MET’s Institute of Pharmacy, Adgaon, Nashik, Maharashtra.
*Corresponding Author E-mail: kavitachandramore@gmail.com
ABSTRACT:
In this study, Synthesis of ethyl 2-(4-halobenzyl)-3-oxobutanoate was carried out by using addition of substituted benzyl bromide to a suspension of t-BuOK (Potassium tert-butoxide) in THF (tetrahydrofuran). The reaction mixture was then refluxed for 12 hr. The progress of reaction was monitored using thin layer chromatography (TLC). Synthesize compound are characterized by elemental analysis and spectral analysis like infra red spectroscopy, nuclear magnetic spectroscopy and mass spectroscopy (IR,1H-NMR, MS). Pharmacological activity of these compound were predicted by individually using prediction of activity spectra for substance (PASS). It shows various pharmacological activities and mechanism of action such as L-glucuronate reductase inhibitor, Gluconate 2-dehydrogenase (acceptor) inhibitor, Centromere associated protein inhibitor, Eye irritation, inactive, GST A substrate, Pectate lyase inhibitor, 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase inhibitor, Acetylcholine neuromuscular blocking agent, Antihypoxic, Aspulvinone dimethylallyl transferase inhibitor.
KEYWORDS: Substituted benzyl bromide; PASS, Probable activity, Probable Inactivity, Pharmacological activity.
INTRODUCTION:
Synthesis of ethyl 2-(4-halobenzyl)-3-oxobutanoate was carried out (figure 1) by using addition of substituted benzyl bromide to a suspension of t-BuOK in THF1. Two substituted benzyl bromide was used i.e bromo benzyl bromide and chloro benzyl bromide. This reaction is a type of nucleophilic substitution. The three different ethyl 2-(4-substituted benzyl)-3-oxobutanoate compound was synthesize. All the synthesized compounds are listed in Table 1 and their structures are determined by elemental analyses and spectral data (IR, 1 H-NMR, EI-MS) and its pharmacological activity was determine by using prediction of activity spectra for substance (PASS) shown in table 2 and 32,3.
PASS Server, this server predicted activity spectrum of a chemical compound as a Pa (probable activity) and Pi (probable inactivity)4. If Pa ˃ 0.7, the substance is very likely to exhibit the activity in experiment, but the chance of substance being the analogue of known pharmaceutical agent is high. If 0.5 < Pa <o.7 the substance is likely to exhibit activity in experiment, but the probability is less, and the substance is unlike known pharmaceutical agents. If Pa is < 0.5 the substance is unlikely to exhibit the activity in experiment. However if the presence of this activity is confirmed in the experiment the substance might to be new molecule entity5,6. The PASS study of ethyl 2-(4-bromobenzyl)-3-oxobutanoate and ethyl 2-(4-chlorobenzyl)-3-oxobutanoate was carried out. It shows various pharmacological activities such as L-glucuronate reductase inhibitor, Gluconate 2-dehydrogenase (acceptor) inhibitor, Centromere associated protein inhibitor, Eye irritation, inactive, GST A substrate, Pectate lyase inhibitor, 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase inhibitor, Acetylcholine neuromuscular blocking agent, Antihypoxic, Aspulvinone dimethylallyl transferase inhibitor.
MATERIAL AND METHOD:
Material: All starting materials and reagents for the synthesis were purchased from commercial sources. Distilled solvents were used for carrying out reactions as well as column chromatography. All the reactions as well as chromatographic processes were monitored by TLC technique on precoated silica gel plates of size 3cm x 1cm procured from E-Merck., followed by exposure to iodine vapors and/or UV irradiation for detection and/or Anisaldehyde reagent and/or Ninhydrin reagent, then it was charred or heated on a hot plate.
Method: To a suspension of t-BuOK (4.74 g, 42.46 mmol) in THF (70mL) was added ethyl acetoacetate (4.9 mL, 38.42mmol) at 0⁰C and the resulting solution was stirred for 30 minutes followed by addition of substituted benzyl bromide (38.42mmol). The reaction mixture was then refluxed for 12h. The progress of reaction was monitored using TLC. After completion of reaction, the reaction mixture was concentrated on rotary evaporator. The residue was diluted with 30ml water and the product was then extracted with ethyl acetate (3 × 30mL). The combined organic extracts were washed with brine, dried over Na2SO4, filtered, and concentrated under vacuum to give oily liquid, which was used directly for next reaction or purified by silica gel column chromatography (compound 3a-c) for spectral analysis (Mobile phase: 1 % EtOAc: Petroleum ether)7. Melting points of the synthesized compounds were recorded on “ANALAB, model-ThermoCal” melting point apparatus shown in table 1. The IR spectra were recorded on “Shimadzu IR solution 1.60” Solids were recorded as KBr pallets and liquids as thin film or CHCl3 solution on NaCl discs.1H NMR spectra were recorded on Agilent 400MHz. Chemical shifts were in parts per million (δ ppm) downfield with respect to tetramethylsilane (TMS) as internal standard. Molecular mass was recorded by GC-MS and only mass spectra presented here with mass spectra on Agilent MDS.
Figure 1: Synthesis of ethyl 2-(4-halobenzyl)-3-oxobutanoate
Table 1: Characteristics of ethyl 2-(4-halobenzyl)-3-oxobutanoate
No |
Compound |
Yield |
Boiling Point |
Nature |
*Rf |
3a |
|
40% |
ND |
Colourless oily liquid |
0.51 |
3b |
|
54% |
ND |
Golden yellow oil |
0.46 |
|
|
|
|
|
|
3c |
|
50% |
ND |
Golden yellow oil |
0.48 |
RESULTS:
IR Spectroscopy:
The IR spectra of ethyl 2-(4-halobenzyl)-3-oxobutanoate (3a-c) was recorded and shown in figure 2,3 and 4.
Figure 2: IR spectrum of ethyl 2-benzyl-3-oxobutanoate (3a)
Figure 3: IR spectrum of ethyl 2-(4-bromobenzyl)-3-oxobutanoate (3b)
Figure 4: IR spectrum of ethyl 2-(4-chlorobenzyl)-3-oxobutanoate (3c)
NMR Spectroscopy: 1H NMR spectrum of ethyl 2-benzyl-3-oxobutanoate (3a) was recorded and shown in figure 5.
Figure 5: 1H NMR spectrum of ethyl 2-benzyl-3-oxobutanoate (3a)
Mass Spectroscopy:
Mass spectra of ethyl 2-benzyl-3-oxobutanoate (3a) was recorded and shown in figure 6.
Figure 6: Mass spectrum of ethyl 2-benzyl-3-oxobutanoate
Prediction of activity spectra for substance:
Predicted activity (Pa) and Predicted inactivity (Pi) of ethyl 2-(4-bromobenzyl)-3-oxobutanoate and ethyl 2-(4-chlorobenzyl)-3-oxobutanoate was shown in table 2 and 3.
Table 2: predicted activity (Pa) and Predicted inactivity (Pi) of ethyl 2-(4-bromobenzyl)-3-oxobutanoate
Pa |
Pi |
Biological Activity |
0.912 |
0.002 |
L-glucuronate reductase inhibitor |
0.880 |
0.005 |
Gluconate 2-dehydrogenase (acceptor) inhibitor |
0.851 |
0.005 |
Prolyl aminopeptidase inhibitor |
0.800 |
0.018 |
Mucomembranous protector |
0.810 |
0.031 |
Aspulvinone dimethylallyltransferase inhibitor |
0.777 |
0.001 |
3-Methyl-2-oxobutanoate hydroxymethyltransferase inhibitor |
0.777 |
0.005 |
Centromere associated protein inhibitor |
0.785 |
0.013 |
Feruloyl esterase inhibitor |
0.771 |
0.004 |
Antihypoxic |
0.730 |
0.017 |
5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase inhibitor |
0.706 |
0.012 |
2-Hydroxymuconate-semialdehyde hydrolase inhibitor |
0.673 |
0.005 |
Pectate lyase inhibitor |
0.690 |
0.024 |
GST A substrate |
0.700 |
0.039 |
Polyporopepsin inhibitor |
0.694 |
0.048 |
Antieczematic |
0.653 |
0.009 |
Acetylcholine neuromuscular blocking agent |
0.652 |
0.015 |
Linoleate diol synthase inhibitor |
0.629 |
0.003 |
Rhodotorulapepsin inhibitor |
0.649 |
0.025 |
Arginine 2-monooxygenase inhibitor |
0.634 |
0.011 |
Eye irritation, inactive |
0.632 |
0.013 |
Cutinase inhibitor |
0.632 |
0.016 |
Platelet aggregation stimulant |
0.654 |
0.o43 |
Fibrinolytic |
0.614 |
0.008 |
Alkylglycerone-phosphate synthase inhibitor |
0.614 |
0.013 |
N-formylmethionyl-peptidase inhibitor |
0.617 |
0.019 |
1,4-Lactonase inhibitor |
0.618 |
0.024 |
Cytoprotectant |
0.658 |
0.069 |
Testosterone 17beta-dehydrogenase (NADP+) inhibitor |
0.589 |
0.004 |
Antiuremic |
0.605 |
0.023 |
Preneoplastic conditions treatment |
0.599 |
0.018 |
All-trans-retinyl-palmitate hydrolase inhibitor |
0.625 |
0.046 |
Glutamyl endopeptidase II inhibitor |
0.654 |
0.047 |
Phobic disorders treatment |
Table 3: predicted activity (Pa) and Predicted inactivity (Pi) of ethyl 2-(4-chlorobenzyl)-3-oxobutanoate
Pa |
Pi |
Biological Activity |
0.910 |
0.004 |
Gluconate 2-dehydrogenase (acceptor) inhibitor |
0.887 |
0.003 |
5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase inhibitor |
0.879 |
0.009 |
Phobic disorders treatment |
0.855 |
0.004 |
2-Hydroxymuconate-semialdehyde hydrolase inhibitor |
0.829 |
0.005 |
Linoleate diol synthase inhibitor |
0.812 |
0.017 |
Antiseborrheic |
0.791 |
0.005 |
Cutinase inhibitor |
0.797 |
0.021 |
Chlordecone reductase inhibitor |
0.777 |
0.001 |
3-Methyl-2-oxobutanoate hydroxymethyltransferase inhibitor |
0.790 |
0.021 |
Mucomembranous protector |
0.757 |
0.008 |
Fibrinolytic |
0.740 |
0.002 |
Pediculicide |
0.742 |
0.005 |
Preneoplastic conditions treatment |
0.752 |
0.016 |
GST A substrate |
0.730 |
0.012 |
Arylsulfate sulfotransferase inhibitor |
0.735 |
0.032 |
Polyporopepsin inhibitor |
0.717 |
0.017 |
Arginine 2-monooxygenase inhibitor |
0.711 |
0.012 |
Lipoprotein lipase inhibitor |
0.745 |
0.052 |
Ubiquinol-cytochrome-c reductase inhibitor |
0.703 |
0.011 |
Lipid metabolism regulator |
0.693 |
0.008 |
Antihypoxic |
0.684 |
0.005 |
H+-exporting ATPase inhibitor |
0.683 |
0.007 |
Eye irritation, inactive |
0.718 |
0.044 |
CYP2J substrate |
0.682 |
0.014 |
Creatininase inhibitor |
0.696 |
0.034 |
CYP2J2 substrate |
0.694 |
0.048 |
Antieczematic |
DISCUSSION:
Synthesis of ethyl 2-(4-halobenzyl)-3-oxobutanoate (3a-c):
Synthesis of compounds 3a-c was done by nucleophilic substitution of substituted benzyl bromides on ethyl acetoacetate in presence of potassium tertiary butoxide in THF.
The IR spectra for compounds 3a-c showed:
· Weak aromatic C-H stretch peak appeared between 3020-3030 cm-1
· Medium aliphatic C-H stretch peak appeared between 2930-2985 cm-1
· A sharp peak for ester C=O stretch appeared between 1735-1740 cm-1
· A sharp peak for ketone C=O stretch appeared between 1712-1716 cm-1
· Strong peak for sp2 C-O stretch appeared between 1213-1246 cm-1
· Strong peak for sp3 C-O stretch appeared between 1020-1090 cm-1
· Strong peak for mono-substituted benzene ring appeared at 700 cm-1
· Strong peak for di-substituted benzene ring appeared between 811-814 cm-1
1H NMR and GC-MS data of ethyl 2-benzyl-3-oxobutanoate (3a)
· Multiplet of five aromatic protons appeared near δ 7.47-6.96 ppm.
· Quartet of two and triplet of three protons of COOCH2CH3 appeared near δ 4.1 and δ 1.2 ppm respectively.
· Triplet of one proton of O-CH3 appeared near δ 3.8 ppm.
· Doublet of two protons of –CH2 next to benzene ring appeared at δ 3.18 ppm.
· Singlet of three protons next to C=O appeared at δ 2.24 ppm.\
· Molecular ion peak appeared at 220.
In PASS study, ethyl 2-(4-bromobenzyl)-3-oxobutanoate and ethyl 2-(4-chlorobenzyl)-3-oxobutanoate shows various pharmacological activities such as L-glucuronate reductase inhibitor, Gluconate 2-dehydrogenase (acceptor) inhibitor, Centromere associated protein inhibitor, Eye irritation, inactive, GST A substrate, Pectate lyase inhibitor, 5-O-(4-coumaroyl)-D-quinate 3'-monooxygenase inhibitor, Acetylcholine neuromuscular blocking agent, Antihypoxic, Aspulvinone dimethylallyl transferase inhibitor.
CONCLUSION:
In the present paper, the synthesis of ethyl 2-(4-halobenzyl)-3-oxobutanoate was carried out and its pharmacological activity determine by using PASS. This compound shows various pharmacological activities so its target point for further synthesize various substituted new compound and determine its Pharmacological sactivity.
CONFLICTS OF INTEREST:
Authors do not have any conflict of interest.
REFERENCES:
1. Hu M, Ni C, H. J. Copper-mediated trifluoromethylation of α-diazo esters with TMSCF3: the important role of water as a promoter. J Am Chem Soc 2012 134(37), 15257–60 DOI: 10.1021/ja307058c
2. Brotzman, N., Xu, Y., Graybill, A., Cocolas, A., Ressler, A., Seeram, N.P., Ma, H. and Henry, G.E. Synthesis and tyrosinase inhibitory activities of 4-oxobutanoate derivatives of carvacrol and thymol. Bioorganic & medicinal chemistry letters 2019 29(1), 56-58 DOI: 10.1016/j.bmcl.2018.11.013.
3. Dai, Y., Huan, B., Zhang, H.S. and He, Y.C. Effective biotransformation of ethyl 4-chloro-3-oxobutanoate into ethyl (S)-4-chloro-3-hydroxybutanoate by recombinant E. coli CCZU-T15 whole cells in [ChCl][Gly]–water media. Applied biochemistry and biotechnology 2017 181(4),1347-1359 DOI: 10.1007/s12010-016-2288-0.
4. Pogodin, P.V., Lagunin, A.A., Rudik, A.V., Filimonov, D.A., Druzhilovskiy, D.S., Nicklaus, M.C. and Poroikov, V.V. How to achieve better results using PASS-based virtual screening: Case study for kinase inhibitors. Frontiers in chemistry, 2018 6, 133 DOI https://doi.org/10.3389/fchem.2018.00133.
5. Matin, M.M., Chakraborty, P., Alam, M.S., Islam, M.M. and Hanee, U. Novel mannopyranoside esters as sterol 14α-demethylase inhibitors: Synthesis, PASS predication, molecular docking, and pharmacokinetic studies. Carbohydrate research 2020, 496, 108-130 DOI: 10.1016/j.carres.2020.108130.
6. Filimonov, D.A., Druzhilovskiy, D.S., Lagunin, A.A., Gloriozova, T.A., Rudik, A.V., Dmitriev, A.V., Pogodin, P.V. and Poroikov, V.V. Computer-aided prediction of biological activity spectra for chemical compounds: opportunities and limitations. Biomedical Chemistry: Research and Methods, 2018 1(1), e00004-e00004 DOI: https://doi.org/10.18097/bmcrm00004
7. Katakam, N.K., Seifert, C.W., D’Auria, J. and Li, G. Efficient synthesis of methyl (s)-4-(1-methylpyrrolidin-2-yl)-3-oxobutanoate as the key intermediate for tropane alkaloid biosynthesis with optically acitve form. Heterocycles: an international journal for reviews and communications in heterocyclic chemistry 2019 99(1), 604-613 DOI: 10.3987/COM-18-S(F)4.
8. Tukaram M. k, Rajendra B. K, Praveen B. H. Oxadiazole: A promising class with different pharmacological activity. Asian journal off research in chemistry, 2012, DOI: 10.5958/0974-4150
9. Prafulla M S, Meeraben P. K, Jitendra G. D. Amino-indane fused heterocycle with diverse pharmacological activity. Asian Journal of Research in Chemistry, 2013; Page 438-447. DOI: 10.5958/0974-4150
10. Kishan D. P, Chhaganbhai N. P, Grishma M. P. Synthesis and Antidiabetic activity of noval 4-((2,4-dioxothiazolidin-5-ylidene)methyl) substituted Benzene sulphonamide. Asian Journal of Research in Pharmaceutical Sciences, 2015, Page 1-7. DOI: 10.5958/2231-5659.2015.00001.6
11. Konda Ravi Kumar, K.N.S. Karthik, P. Reshma Begum, Ch. M.M. Prasada Rao. Synthesis, characterization and biological evaluation of benzothiazole derivatives as potential antimicrobial and analgesic agents. Asian Journal of Research in Pharmaceutical Sciences. 2017; 7(2):115-119. DOI: 10.5958/2231-5659.2017.00018.2
12. Valli.G., MareeswariP., RamuK., Thanga Thirupathi A.. Analgesic, antipyretic, CNS and pass prediction Activities of 4-(4-hydroxy benzylidene amino) phenol Schiff base. Research Journal of Science and Technology. 2012; 4(5): 192-196. DOI: 10.5958/2349-2988
13. Pavlo V. Zadorozhnii, Nina P. Popykhach, Vadym V. Kiselev, Ihor O. Pokotylo, Oxana V. Okhtina, Aleksandr V. Kharchenko. In Silico Prediction of Anticonvulsant Activity of N-(2,2,2-Trichloro-1-hydroxyethyl)alkenyl- and –alkylarylcarboxamides. Research Journal of Pharmacy and Technology 2018; 11(2):711-716. DOI: 10.5958/0974-360X.2018.00134.8
14. Valli G., Mageshwari M. PASS Prediction of Noni Fruit Constituents. Research Journal of Pharmacy and Technology. 5(3): Mar.2012; Page 431-437. DOI: 10.5958/0974-360X.
15. Pavlo V. Zadorozhnii, Nina P. Popykhach, Vadym V. Kiselev, Ihor O. Pokotylo, Oxana V. Okhtina, Aleksandr V. Kharchenko. In Silico Prediction of Anticonvulsant Activity of N-(2,2,2-Trichloro-1-hydroxyethyl)alkenyl- and –alkylarylcarboxamides. Research Journal of Pharmacy and Technology.2018; 11(2):711-716. DOI: 10.5958/0974-360X.2018.00134.8.
16. Imad Hadi Hameed, Maria Rosario Calixto Cotos, Mohammed Yahya Hadi. Antimicrobial, Antioxidant, Hemolytic, Anti-anxiety, and Antihypertensive activity of Passiflora species. Research Journal of Pharmacy and Technology 2017; 10(11): 4079-4084. DOI: 10.5958/0974-360X.2017.00739.9
17. C.R. Prakash, S. Raja, G. Saravanan, P. Dinesh Kumar, T. Panneer Selvam. Synthesis and Evaluation of Antioxidant Activities of Some Novel Isatin Derivatives and Analogs. Asian Journal of Research in Pharmaceutical Sciences 1(4): Oct.-Dec. 2011; Page 140-143. DOI: 10.5958/2231-5659.
Received on 13.07.2021 Modified on 04.11.2021
Accepted on 09.01.2022 ©Asian Pharma Press All Right Reserved
Asian J. Res. Pharm. Sci. 2022; 12(2):102-106.
DOI: 10.52711/2231-5659.2022.00017